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  "Title": "Model Based Clustering of Binary Dissimilarity Measurements",
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  "Date": "2024-09-24",
  "Authors@R": "c(\nperson(\"Sergio\", \"Venturini\", role=c(\"aut\", \"cre\"), email = \"sergio.venturini@unicatt.it\"),\nperson(\"Raffaella\", \"Piccarreta\", role=c(\"ctb\"), email = \"raffaella.piccarreta@unibocconi.it\"))",
  "Description": "Functions for fitting a Bayesian model for grouping binary\ndissimilarity matrices in homogeneous clusters. Currently, it\nincludes methods only for binary data\n(<doi:10.18637/jss.v100.i16>).",
  "Author": "Sergio Venturini [aut, cre], Raffaella Piccarreta [ctb]",
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    "bmds_get_x_mode",
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    "clusters",
    "comp_ssr",
    "control_dmbc",
    "dmbc",
    "dmbc_check_groups",
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    "dmbc_fit",
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    "dmbc_fit_list_to_mcmc.list",
    "dmbc_fit_to_mcmc",
    "dmbc_get_configuration",
    "dmbc_get_map",
    "dmbc_get_ml",
    "dmbc_get_postmean",
    "dmbc_get_postmedian",
    "dmbc_IC",
    "dmbc_init",
    "dmbc_logLik",
    "dmbc_logLik_rbmds",
    "dmbc_match_groups",
    "dmbc_prior",
    "initialize",
    "mdsic",
    "plot",
    "prior_dmbc",
    "show",
    "subset",
    "summary",
    "update",
    "update_prior"
  ],
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    {
      "name": "animals",
      "title": "List of binary dissimilarity matrices among 18 animals.",
      "object": "animals",
      "class": [
        "dmbc_data"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "kinship",
      "title": "List of binary dissimilarity matrices among 15 kinship terms.",
      "object": "kinship",
      "class": [
        "dmbc_data"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "simdiss",
      "title": "Simulated binary dissimilarity matrices.",
      "object": "simdiss",
      "class": [
        "dmbc_data"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
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    {
      "page": "adjust_x",
      "title": "Adjustment of the center and orientation of a latent configuration.",
      "topics": [
        "adjust_x"
      ]
    },
    {
      "page": "animals",
      "title": "List of binary dissimilarity matrices among 18 animals.",
      "topics": [
        "animals"
      ]
    },
    {
      "page": "bmds",
      "title": "Bayesian multidimensional scaling (BMDS) using Markov Chain Monte Carlo (MCMC).",
      "topics": [
        "bmds"
      ]
    },
    {
      "page": "bmds_get_x_mode",
      "title": "Posterior mode latent configuration in Bayesian multidimensional scaling (BMDS).",
      "topics": [
        "bmds_get_x_mode"
      ]
    },
    {
      "page": "check_list_na",
      "title": "Auxiliary function to recursively check NAs in a list.",
      "topics": [
        "check_list_na"
      ]
    },
    {
      "page": "clusters-dmbc_config-method",
      "title": "Extract the final cluster memberships from a 'dmbc_config' class instance.",
      "topics": [
        "clusters,dmbc_config-method",
        "dmbc_config-clusters"
      ]
    },
    {
      "page": "comp_ssr",
      "title": "Sum of squared residuals (SSR) from the observed distances and the given latent configuration.",
      "topics": [
        "comp_ssr"
      ]
    },
    {
      "page": "dmbc",
      "title": "Estimation of a DMBC model.",
      "topics": [
        "dmbc"
      ]
    },
    {
      "page": "dmbc_check_groups",
      "title": "Auxiliary function for checking the grouping results of a fitted DMBC model.",
      "topics": [
        "dmbc_check_groups"
      ]
    },
    {
      "page": "dmbc_config-class",
      "title": "An S4 class to represent the latent configuration estimate for a DMBC model.",
      "topics": [
        "dmbc_config",
        "dmbc_config-class"
      ]
    },
    {
      "page": "dmbc_control",
      "title": "Auxiliary Function for Controlling DMBC Model Fitting",
      "topics": [
        "check_control",
        "control_dmbc",
        "dmbc_control"
      ]
    },
    {
      "page": "dmbc_data-class",
      "title": "An S4 class to represent the data to use in a DMBC model.",
      "topics": [
        "dmbc_data",
        "dmbc_data-class"
      ]
    },
    {
      "page": "dmbc_fit",
      "title": "Fitter function for DMBC models.",
      "topics": [
        "dmbc_fit"
      ]
    },
    {
      "page": "dmbc_fit_list_to_list",
      "title": "Conversion of an 'dmbc_fit_list' object to a 'list'.",
      "topics": [
        "dmbc_fit_list_to_list"
      ]
    },
    {
      "page": "dmbc_fit_list_to_mcmc.list",
      "title": "Conversion of an 'dmbc_fit_list' object to an object of class 'mcmc.list'.",
      "topics": [
        "dmbc_fit_list_to_mcmc.list"
      ]
    },
    {
      "page": "dmbc_fit_list-class",
      "title": "An S4 class to represent the results of fitting DMBC model.",
      "topics": [
        "dmbc_fit_list",
        "dmbc_fit_list-class"
      ]
    },
    {
      "page": "dmbc_fit_to_mcmc",
      "title": "Conversion of an 'dmbc_fit' object to an object of class 'mcmc'.",
      "topics": [
        "dmbc_fit_to_mcmc"
      ]
    },
    {
      "page": "dmbc_fit-class",
      "title": "An S4 class to represent the results of fitting DMBC model.",
      "topics": [
        "dmbc_fit-class"
      ]
    },
    {
      "page": "dmbc_get_configuration",
      "title": "Extractor function for a fitted DMBC model.",
      "topics": [
        "dmbc_get_configuration"
      ]
    },
    {
      "page": "dmbc_get_map",
      "title": "Extractor function for a fitted DMBC model.",
      "topics": [
        "dmbc_get_map"
      ]
    },
    {
      "page": "dmbc_get_ml",
      "title": "Extractor function for a fitted DMBC model.",
      "topics": [
        "dmbc_get_ml"
      ]
    },
    {
      "page": "dmbc_get_postmean",
      "title": "Extractor function for a fitted DMBC model.",
      "topics": [
        "dmbc_get_postmean"
      ]
    },
    {
      "page": "dmbc_get_postmedian",
      "title": "Extractor function for a fitted DMBC model.",
      "topics": [
        "dmbc_get_postmedian"
      ]
    },
    {
      "page": "dmbc_IC",
      "title": "Model selection of DMBC models.",
      "topics": [
        "dmbc_IC"
      ]
    },
    {
      "page": "dmbc_ic-class",
      "title": "An S4 class to represent the comparison of a set of DMBC models.",
      "topics": [
        "dmbc_ic",
        "dmbc_ic-class"
      ]
    },
    {
      "page": "dmbc_init",
      "title": "Function to compute the starting values before fitting a DMBC models.",
      "topics": [
        "dmbc_init"
      ]
    },
    {
      "page": "dmbc_logLik",
      "title": "Log-likelihood for DMBC models.",
      "topics": [
        "dmbc_logLik"
      ]
    },
    {
      "page": "dmbc_logLik_rbmds",
      "title": "Log-likelihood for DMBC models.",
      "topics": [
        "dmbc_logLik_rbmds"
      ]
    },
    {
      "page": "dmbc_match_groups",
      "title": "Auxiliary function for realigning the grouping of a fitted DMBC model.",
      "topics": [
        "dmbc_match_groups"
      ]
    },
    {
      "page": "dmbc_model-class",
      "title": "An S4 class to represent a DMBC model.",
      "topics": [
        "dmbc_model",
        "dmbc_model-class"
      ]
    },
    {
      "page": "dmbc_prior",
      "title": "Auxiliary Function for Setting DMBC Model Priors",
      "topics": [
        "check_prior",
        "dmbc_prior",
        "prior_dmbc",
        "update_prior"
      ]
    },
    {
      "page": "initialize-dmbc_config-method",
      "title": "Create an instance of the 'dmbc_config' class using new/initialize.",
      "topics": [
        "dmbc_config-initialize",
        "initialize,dmbc_config-method"
      ]
    },
    {
      "page": "initialize-dmbc_data-method",
      "title": "Create an instance of the 'dmbc_data' class using new/initialize.",
      "topics": [
        "dmbc_data-initialize",
        "initialize,dmbc_data-method"
      ]
    },
    {
      "page": "initialize-dmbc_fit_list-method",
      "title": "Create an instance of the 'dmbc_fit_list' class using new/initialize.",
      "topics": [
        "dmbc_fit_list-initialize",
        "initialize,dmbc_fit_list-method"
      ]
    },
    {
      "page": "initialize-dmbc_fit-method",
      "title": "Create an instance of the 'dmbc_fit' class using new/initialize.",
      "topics": [
        "dmbc_fit-initialize",
        "initialize,dmbc_fit-method"
      ]
    },
    {
      "page": "initialize-dmbc_ic-method",
      "title": "Create an instance of the 'dmbc_ic' class using new/initialize.",
      "topics": [
        "dmbc_ic-initialize",
        "initialize,dmbc_ic-method"
      ]
    },
    {
      "page": "initialize-dmbc_model-method",
      "title": "Create an instance of the 'dmbc_model' class using new/initialize.",
      "topics": [
        "dmbc_model-initialize",
        "initialize,dmbc_model-method"
      ]
    },
    {
      "page": "kinship",
      "title": "List of binary dissimilarity matrices among 15 kinship terms.",
      "topics": [
        "kinship"
      ]
    },
    {
      "page": "mdsic",
      "title": "Information criterion for Bayesian multidimensional scaling (BMDS).",
      "topics": [
        "mdsic"
      ]
    },
    {
      "page": "plot-dmbc_config-ANY-method",
      "title": "Provide a graphical summary of a 'dmbc_config' class instance.",
      "topics": [
        "dmbc_config-plot",
        "plot,dmbc_config,ANY-method",
        "plot,dmbc_config-method"
      ]
    },
    {
      "page": "plot-dmbc_data-ANY-method",
      "title": "Provide a graphical summary of a 'dmbc_data' class instance.",
      "topics": [
        "dmbc_data-plot",
        "plot,dmbc_data,ANY-method",
        "plot,dmbc_data-method"
      ]
    },
    {
      "page": "plot-dmbc_fit_list-ANY-method",
      "title": "Provide a graphical summary of a 'dmbc_fit_list' class instance.",
      "topics": [
        "dmbc_fit_list-plot",
        "plot,dmbc_fit_list,ANY-method",
        "plot,dmbc_fit_list-method"
      ]
    },
    {
      "page": "plot-dmbc_fit-ANY-method",
      "title": "Provide a graphical summary of a 'dmbc_fit' class instance.",
      "topics": [
        "dmbc_fit-plot",
        "plot,dmbc_fit,ANY-method",
        "plot,dmbc_fit-method"
      ]
    },
    {
      "page": "plot-dmbc_ic-ANY-method",
      "title": "Provide a graphical summary of a 'dmbc_ic' class instance.",
      "topics": [
        "dmbc_ic-plot",
        "plot,dmbc_ic,ANY-method",
        "plot,dmbc_ic-method"
      ]
    },
    {
      "page": "show-dmbc_config-method",
      "title": "Show an instance of the 'dmbc_config' class.",
      "topics": [
        "dmbc_config-show",
        "show,dmbc_config-method"
      ]
    },
    {
      "page": "show-dmbc_data-method",
      "title": "Show an instance of the 'dmbc_data' class.",
      "topics": [
        "dmbc_data-show",
        "show,dmbc_data-method"
      ]
    },
    {
      "page": "show-dmbc_fit_list-method",
      "title": "Show an instance of the 'dmbc_fit_list' class.",
      "topics": [
        "dmbc_fit_list-show",
        "show,dmbc_fit_list-method"
      ]
    },
    {
      "page": "show-dmbc_fit-method",
      "title": "Show an instance of the 'dmbc_fit' class.",
      "topics": [
        "dmbc_fit-show",
        "show,dmbc_fit-method"
      ]
    },
    {
      "page": "show-dmbc_ic-method",
      "title": "Show an instance of the 'dmbc_ic' class.",
      "topics": [
        "dmbc_ic-show",
        "show,dmbc_ic-method"
      ]
    },
    {
      "page": "show-dmbc_model-method",
      "title": "Show an instance of the 'dmbc_model' class.",
      "topics": [
        "dmbc_model-show",
        "show,dmbc_model-method"
      ]
    },
    {
      "page": "simdiss",
      "title": "Simulated binary dissimilarity matrices.",
      "topics": [
        "simdiss"
      ]
    },
    {
      "page": "subset-dmbc_fit_list-method",
      "title": "Subsetting a 'dmbc_fit_list' object.",
      "topics": [
        "dmbc_fit_list-subset",
        "subset,dmbc_fit_list-method"
      ]
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